Applications: Vasp Quantum espresso CP2K Matlab Wien2k SILVACO Miniconda 2 and 3 CNVnator ROOT WRF SBDART Model ROMSAF WACCM NCL RT Model Schrodinger Gaussian Lammps Gromacs SciLab ANSYS Molpro AIIMS Tools: Sam tools Bam tools bcf tools FastQC Graphviz Picard Sickle Cutadapt FASTX Compilers: OpenMPI MPICH Javac Cmake Assemblers: All Paths Celera Ray SSPACE Velvet Velvet Optimiser Trinity SGA SOAP denovo SOAP denovo-Trans Edena Trans-Abyss Oases Cap3 CNVnator Annovar Annocript SPADES Interpreters and Runtime Environments: R Python Bio Python Bio conductor Perl Bio Perl Java Numpy Scientific Libraries: LAPACK BLAS FFTW SCALAPACK HDF5